Helper scripts to compile HDF5 Fortran applications
Syntax:
h5fc [OPTIONS] <compile line>
h5pfc [OPTIONS] <compile_line>
Description:
h5fc
and h5pfc
can be used in much the same way mpif90
by MPICH is used to compile an HDF5 program. These tools take care of specifying on the command line the locations of the HDF5 header files and libraries. h5fc
is for use in serial computing environments; h5pfc
is for parallel environments.h5fc
and h5pfc
subsume all other compiler scripts in that if you have used a set of scripts to compile the HDF5 Fortran library, then h5fc
and h5pfc
also use those scripts. For example, when compiling an MPICH program, you use the mpif90
script. If you have built HDF5 using MPICH, then h5fc
uses the MPICH program for compilation.
Some programs use HDF5 in only a few modules. It is not necessary to use h5fc
and h5pfc
to compile those modules which do not use HDF5. In fact, since h5fc
and h5pfc
are only convenience scripts, you can still compile HDF5 Fortran modules in the normal manner, though you will have to specify the HDF5 libraries and include paths yourself. Use the -show
option to see the details.
An example of how to use h5fc
to compile the program hdf_prog
, which consists of the modules prog1.f90
and prog2.f90
and uses the HDF5 Fortran library, would be as follows. h5pfc
is used in an identical manner.
# h5fc -c prog1.f90
# h5fc -c prog2.f90
# h5fc -o hdf_prog prog1.o prog2.o
Options and Parameters:
-help | Prints a help message. |
-echo | Show all the shell commands executed. |
-prefix=DIR | Use the directory DIR to find HDF5 lib/ and include/ subdirectories. Default: prefix specified when configuring HDF5. |
-show | Show the commands without executing them. |
-shlib | Compile using shared HDF5 libraries. Default for HDF5 built without static libraries. |
-noshlib | Compile using static HDF5 libraries. Default for HDF5 built with static libraries. |
<compile line> | The normal compile line options for your compiler.
h5fc and h5pfc use the the same compiler you used to compile HDF5. Check your compiler's manual for more information on which options are needed. |
Environment Variables:
When set, these environment variables override some of the built-in h5fc
and h5pfc
defaults.
HDF5_FC | Use a different Fortran compiler. |
HDF5_FLINKER | Use a different linker. |
HDF5_USE_SHLIB=[yes|no] | Use shared version of the HDF5 library. Default: no, except when HDF5 built with only shared libraries. |
HDF5_FFLAGS | Use additional Fortran compiler flags. |
HDF5_LDFLAGS | Use additional library paths. |
HDF5_LIBS | Use additional libraries. |
The last three of these environment variables have corresponding variables with names ending in BASE
that can also be set by editing their values in the "Things You Can Modify to Override HDF5 Library Build Components" section of the h5fc
and h5pfc
scripts.
Note that adding library paths to HDF5_LDFLAGS
where another HDF5 version is located may link your program with that other HDF5 Library version.
Exit Status:
0 | Succeeded. |
> 0 | An error occurred. |
History:
Release | Change |
---|
1.8.12 | Tool modified to switch default to link to shared libraries when HDF5 configured with --disable-static . |
1.8.11 | Tool updated to recognize .f95 , .f03 , and .f08 file extensions. |
1.8.6 | Three compiler flags and environment variables added. |
1.8.5 | Tool exit status codes updated. |
1.6.0 | Tool introduced in this release. |
--- Last Modified: August 28, 2019 | 08:48 AM